IL_8VVS_032

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

8VVS|1|WA|G|667, 8VVS|1|WA|A|668, 8VVS|1|WA|C|669

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVS_032 not in the Motif Atlas

Geometric match to IL_8CRE_398

Geometric discrepancy: 0.2704

The information below is about IL_8CRE_398

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

8VVS|1|WA|G|488
8VVS|1|WA|G|489
*
8VVS|1|WA|C|666
8VVS|1|WA|G|667
8VVS|1|WA|A|668
8VVS|1|WA|C|669
8VVS|1|WA|C|670

Current chains

Chain WA

28S rRNA

Nearby chains

Chain C

uL4

Chain P

eL18

Chain PA

L28