IL_8VVS_069
3D structure
- PDB id
- 8VVS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 8VVS|1|WA|G|1743
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVS_069 not in the Motif Atlas
- Geometric match to IL_8P9A_268
- Geometric discrepancy: 0.1101
- The information below is about IL_8P9A_268
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_16301.1
- Basepair signature
- cWW-cWS-tWH-R-L-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
8VVS|1|WA|G|1741
8VVS|1|WA|C|1742
8VVS|1|WA|G|1743
8VVS|1|WA|A|1744
8VVS|1|WA|A|1745
8VVS|1|WA|U|1746
*
8VVS|1|WA|A|1788
8VVS|1|WA|A|1789
8VVS|1|WA|A|1790
8VVS|1|WA|C|1791
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain D
- uL18
- Chain I
- L10
- Chain S
- eL21
- Chain XA
- 5S ribosomal RNA; 5S rRNA
Coloring options: