IL_8P9A_268

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCGAAU*AAAC

Length

10 nucleotides

Bulged bases

8P9A|1|AR|G|1001

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_26222.2

Basepair signature

cWW-cWS-cSH-tWH-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

8P9A|1|AR|G|999
8P9A|1|AR|C|1000
8P9A|1|AR|G|1001
8P9A|1|AR|A|1002
8P9A|1|AR|A|1003
8P9A|1|AR|U|1004
*
8P9A|1|AR|A|1046
8P9A|1|AR|A|1047
8P9A|1|AR|A|1048
8P9A|1|AR|C|1049

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain AS

5S ribosomal RNA; 5S rRNA

Chain CG

60S ribosomal protein L5

Chain CL

60S ribosomal protein L10

Chain CV

60S ribosomal protein L21-A