3D structure

PDB id
8P9A (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with Methyllissoclimide
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
GCGAAU*AAAC
Length
10 nucleotides
Bulged bases
8P9A|1|AR|G|1001
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_26222.2
Basepair signature
cWW-cWS-cSH-tWH-R-L-R-cWW
Number of instances in this motif group
6

Unit IDs

8P9A|1|AR|G|999
8P9A|1|AR|C|1000
8P9A|1|AR|G|1001
8P9A|1|AR|A|1002
8P9A|1|AR|A|1003
8P9A|1|AR|U|1004
*
8P9A|1|AR|A|1046
8P9A|1|AR|A|1047
8P9A|1|AR|A|1048
8P9A|1|AR|C|1049

Current chains

Chain AR
25S ribosomal RNA

Nearby chains

Chain AS
5S ribosomal RNA; 5S rRNA
Chain CG
60S ribosomal protein L5
Chain CL
60S ribosomal protein L10
Chain CV
60S ribosomal protein L21-A

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.2251 s