IL_8VVS_096

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCG*UGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVS_096 not in the Motif Atlas

Geometric match to IL_4WSM_372

Geometric discrepancy: 0.3842

The information below is about IL_4WSM_372

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16315.2

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8VVS|1|WA|G|2483
8VVS|1|WA|C|2484
8VVS|1|WA|G|2485
*
8VVS|1|WA|U|2497
8VVS|1|WA|G|2498
8VVS|1|WA|C|2499
8VVS|1|WA|C|2500

Current chains

Chain WA

28S rRNA

Nearby chains

Chain W

uL23

Chain YA

5.8S ribosomal RNA; 5.8S rRNA