IL_8VVS_106

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AACAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVS_106 not in the Motif Atlas

Geometric match to IL_8CRE_079

Geometric discrepancy: 0.1278

The information below is about IL_8CRE_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22829.2

Basepair signature

cWW-L-tHS-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8VVS|1|WA|A|2834
8VVS|1|WA|A|2835
8VVS|1|WA|C|2836
8VVS|1|WA|A|2837
8VVS|1|WA|A|2838
8VVS|1|WA|U|2839
8VVS|1|WA|G|2840
*
8VVS|1|WA|C|3852
8VVS|1|WA|U|3853
8VVS|1|WA|A|3854
8VVS|1|WA|U|3855

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL3

Chain CA

L31

Chain O

uL22