IL_8VVS_109

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

8VVS|1|WA|G|3841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVS_109 not in the Motif Atlas

Geometric match to IL_8P9A_305

Geometric discrepancy: 0.1083

The information below is about IL_8P9A_305

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

8VVS|1|WA|G|2849
8VVS|1|WA|G|2850
8VVS|1|WA|A|2851
8VVS|1|WA|A|2852
8VVS|1|WA|G|2853
8VVS|1|WA|U|2854
8VVS|1|WA|C|2855
8VVS|1|WA|G|2856
8VVS|1|WA|G|2857
*
8VVS|1|WA|C|3839
8VVS|1|WA|U|3840
8VVS|1|WA|G|3841
8VVS|1|WA|U|3842
8VVS|1|WA|C|3843

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL3

Chain U

L23