IL_8VVS_141

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

8VVS|1|WA|G|4524, 8VVS|1|WA|A|4525

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVS_141 not in the Motif Atlas

Geometric match to IL_8CRE_116

Geometric discrepancy: 0.093

The information below is about IL_8CRE_116

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8VVS|1|WA|C|4458
8VVS|1|WA|U|4459
8VVS|1|WA|C|4460
*
8VVS|1|WA|G|4522
8VVS|1|WA|U|4523
8VVS|1|WA|G|4524
8VVS|1|WA|A|4525
8VVS|1|WA|G|4526

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL3

Chain IC

peptide

Chain U

L23