IL_8VVS_149

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

8VVS|1|WA|C|4722

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVS_149 not in the Motif Atlas

Geometric match to IL_8P9A_342

Geometric discrepancy: 0.2593

The information below is about IL_8P9A_342

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

8VVS|1|WA|C|4584
8VVS|1|WA|C|4585
8VVS|1|WA|A|4586
8VVS|1|WA|U|4587
*
8VVS|1|WA|A|4719
8VVS|1|WA|G|4720
8VVS|1|WA|G|4721
8VVS|1|WA|C|4722
8VVS|1|WA|G|4723

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL3

Chain N

uL13