IL_8VVS_183

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

8VVS|1|ZA|U|44, 8VVS|1|ZA|A|45, 8VVS|1|ZA|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVS_183 not in the Motif Atlas

Geometric match to IL_8CRE_393

Geometric discrepancy: 0.1109

The information below is about IL_8CRE_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88082.2

Basepair signature

cWW-L-tSS-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8VVS|1|ZA|G|41
8VVS|1|ZA|A|42
8VVS|1|ZA|U|43
8VVS|1|ZA|U|44
8VVS|1|ZA|A|45
8VVS|1|ZA|A|46
8VVS|1|ZA|G|47
*
8VVS|1|ZA|C|479
8VVS|1|ZA|G|480
8VVS|1|ZA|C|481

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain HC

eukaryotic elongation factor 1 A

Chain XB

S23