Motif IL_88082.5 Version IL_88082.5 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 1-9 | 5-8 | 6-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_9H3G_158 | 9H3G | 0.0594 | 1 | h1 | SSU rRNA | G | 42 | A | 43 | U | 44 | U | 45 | A | 46 | G | 48 | * | C | 433 | G | 434 | C | 435 | cWW | ntSs | cWW |
| 2 | IL_9PN5_145 | 9PN5 | 0.0476 | 1 | B5 | SSU rRNA | G | 42 | A | 43 | U | 44 | U | 45 | A | 46 | G | 48 | * | C | 431 | G | 432 | C | 433 | cWW | ntSs | cWW |
| 3 | IL_9SUM_140 | 9SUM | 0.0000 | 1 | CA | SSU rRNA | G | 42 | A | 43 | U | 44 | U | 45 | A | 46 | G | 48 | * | C | 420 | G | 421 | C | 422 | cWW | ntSs | cWW |
| 4 | IL_8CRE_393 | 8CRE | 0.0583 | 1 | CM | SSU rRNA | G | 42 | A | 43 | U | 44 | U | 45 | A | 46 | G | 48 | * | C | 429 | G | 430 | C | 431 | cWW | tSs | cWW |
| 5 | IL_8GLP_191 | 8GLP | 0.0675 | 1 | S2 | SSU rRNA | G | 41 | A | 42 | U | 43 | U | 44 | A | 45 | G | 47 | * | C | 479 | G | 480 | C | 481 | cWW | ntSs | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUUAAG*CGC | 5 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUUAA*G | 5 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-L-tSS-L-cWW-L
- Heat map statistics
- Min 0.05 | Avg 0.05 | Max 0.08
Coloring options: