IL_8VVS_189

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8VVS|1|ZA|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVS_189 not in the Motif Atlas

Geometric match to IL_8CRE_400

Geometric discrepancy: 0.1404

The information below is about IL_8CRE_400

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24485.1

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

4

Unit IDs

8VVS|1|ZA|G|145
8VVS|1|ZA|G|146
8VVS|1|ZA|A|147
8VVS|1|ZA|U|148
8VVS|1|ZA|A|149
8VVS|1|ZA|A|150
8VVS|1|ZA|C|151
*
8VVS|1|ZA|G|167
8VVS|1|ZA|C|168
8VVS|1|ZA|U|169
8VVS|1|ZA|A|170
8VVS|1|ZA|A|171
8VVS|1|ZA|U|172
8VVS|1|ZA|A|173
8VVS|1|ZA|C|174

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain GB

eS6

Chain V

uL24

Chain YB

S24