IL_8VVS_190

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUG*UAGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVS_190 not in the Motif Atlas

Geometric match to IL_8BH9_001

Geometric discrepancy: 0.2624

The information below is about IL_8BH9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65740.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

8VVS|1|ZA|U|152
8VVS|1|ZA|G|153
8VVS|1|ZA|U|154
8VVS|1|ZA|G|155
*
8VVS|1|ZA|U|163
8VVS|1|ZA|A|164
8VVS|1|ZA|G|165
8VVS|1|ZA|A|166

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain GB

eS6

Chain V

uL24

Chain YB

S24