IL_8VVS_207
3D structure
- PDB id
- 8VVS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 8VVS|1|ZA|U|627, 8VVS|1|ZA|A|628, 8VVS|1|ZA|U|630, 8VVS|1|ZA|U|631
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVS_207 not in the Motif Atlas
- Geometric match to IL_8P9A_404
- Geometric discrepancy: 0.2063
- The information below is about IL_8P9A_404
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8VVS|1|ZA|G|611
8VVS|1|ZA|U|612
8VVS|1|ZA|G|613
8VVS|1|ZA|C|614
8VVS|1|ZA|C|615
8VVS|1|ZA|A|616
8VVS|1|ZA|G|617
*
8VVS|1|ZA|C|624
8VVS|1|ZA|G|625
8VVS|1|ZA|G|626
8VVS|1|ZA|U|627
8VVS|1|ZA|A|628
8VVS|1|ZA|A|629
8VVS|1|ZA|U|630
8VVS|1|ZA|U|631
8VVS|1|ZA|C|632
Current chains
- Chain ZA
- 18S rRNA
Nearby chains
- Chain DB
- S3
- Chain EC
- S30
- Chain UA
- Transfer RNA; tRNA
- Chain VA
- mRNA
- Chain XB
- S23
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