IL_8VVS_209

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

8VVS|1|ZA|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVS_209 not in the Motif Atlas

Geometric match to IL_8P9A_405

Geometric discrepancy: 0.1698

The information below is about IL_8P9A_405

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8VVS|1|ZA|G|665
8VVS|1|ZA|U|666
8VVS|1|ZA|U|667
8VVS|1|ZA|A|668
8VVS|1|ZA|A|669
8VVS|1|ZA|A|670
8VVS|1|ZA|A|671
*
8VVS|1|ZA|U|1161
8VVS|1|ZA|C|1162

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain AC

S26

Chain XB

S23