IL_8VVS_210

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVS_210 not in the Motif Atlas

Geometric match to IL_8CRE_425

Geometric discrepancy: 0.0882

The information below is about IL_8CRE_425

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8VVS|1|ZA|G|673
8VVS|1|ZA|C|674
8VVS|1|ZA|U|675
*
8VVS|1|ZA|A|1030
8VVS|1|ZA|A|1031
8VVS|1|ZA|C|1032

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain AC

S26

Chain NB

uS15

Chain WA

Large subunit ribosomal RNA; LSU rRNA