IL_8VVS_258

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVS_258 not in the Motif Atlas

Geometric match to IL_8CRE_471

Geometric discrepancy: 0.105

The information below is about IL_8CRE_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

8VVS|1|ZA|C|1717
8VVS|1|ZA|G|1718
8VVS|1|ZA|A|1719
8VVS|1|ZA|U|1720
*
8VVS|1|ZA|A|1813
8VVS|1|ZA|G|1814
8VVS|1|ZA|A|1815
8VVS|1|ZA|G|1816

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain MA

eL41

Chain U

L23

Chain WA

Large subunit ribosomal RNA; LSU rRNA