IL_8VVT_013

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

8VVT|1|WA|C|245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_013 not in the Motif Atlas

Geometric match to IL_6XKO_001

Geometric discrepancy: 0.3591

The information below is about IL_6XKO_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

8VVT|1|WA|C|195
8VVT|1|WA|C|196
*
8VVT|1|WA|G|244
8VVT|1|WA|C|245
8VVT|1|WA|G|246

Current chains

Chain WA

28S rRNA

Nearby chains

Chain C

uL4

Chain X

L26

Chain YA

5.8S ribosomal RNA; 5.8S rRNA