IL_8VVT_021

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCC*GCGG

Length

7 nucleotides

Bulged bases

8VVT|1|WA|C|697

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_021 not in the Motif Atlas

Geometric match to IL_5UNE_001

Geometric discrepancy: 0.2397

The information below is about IL_5UNE_001

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_87720.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

8

Unit IDs

8VVT|1|WA|C|458
8VVT|1|WA|C|459
8VVT|1|WA|C|460
*
8VVT|1|WA|G|696
8VVT|1|WA|C|697
8VVT|1|WA|G|698
8VVT|1|WA|G|699

Current chains

Chain WA

28S rRNA

Nearby chains

Chain E

L6

Chain PA

eL28