IL_8VVT_033

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAGG*CAGCAGCAGCU

Length

15 nucleotides

Bulged bases

8VVT|1|WA|A|933, 8VVT|1|WA|A|936, 8VVT|1|WA|C|938, 8VVT|1|WA|A|939, 8VVT|1|WA|G|940, 8VVT|1|WA|C|941

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVT|1|WA|A|733
8VVT|1|WA|A|734
8VVT|1|WA|G|735
8VVT|1|WA|G|736
*
8VVT|1|WA|C|932
8VVT|1|WA|A|933
8VVT|1|WA|G|934
8VVT|1|WA|C|935
8VVT|1|WA|A|936
8VVT|1|WA|G|937
8VVT|1|WA|C|938
8VVT|1|WA|A|939
8VVT|1|WA|G|940
8VVT|1|WA|C|941
8VVT|1|WA|U|942

Current chains

Chain WA

28S rRNA

Nearby chains

Chain C

uL4

Chain L

L14

Chain R

eL20