IL_8VVT_035
3D structure
- PDB id
- 8VVT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the rotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAGGUGG*UGUUACAGC
- Length
- 17 nucleotides
- Bulged bases
- 8VVT|1|WA|G|750, 8VVT|1|WA|U|916, 8VVT|1|WA|C|918
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVT_035 not in the Motif Atlas
- Geometric match to IL_8P9A_248
- Geometric discrepancy: 0.2885
- The information below is about IL_8P9A_248
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25001.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8VVT|1|WA|G|747
8VVT|1|WA|A|748
8VVT|1|WA|A|749
8VVT|1|WA|G|750
8VVT|1|WA|G|751
8VVT|1|WA|U|752
8VVT|1|WA|G|753
8VVT|1|WA|G|754
*
8VVT|1|WA|U|913
8VVT|1|WA|G|914
8VVT|1|WA|U|915
8VVT|1|WA|U|916
8VVT|1|WA|A|917
8VVT|1|WA|C|918
8VVT|1|WA|A|919
8VVT|1|WA|G|920
8VVT|1|WA|C|921
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain L
- L14
- Chain R
- eL20
Coloring options: