IL_8VVT_054
3D structure
- PDB id
- 8VVT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the rotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- G(OMG)G*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 8VVT|1|WA|OMG|1630, 8VVT|1|WA|A|1642, 8VVT|1|WA|A|1643, 8VVT|1|WA|U|1644
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVT_054 not in the Motif Atlas
- Geometric match to IL_8CRE_036
- Geometric discrepancy: 0.0636
- The information below is about IL_8CRE_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_06549.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8VVT|1|WA|G|1629
8VVT|1|WA|OMG|1630
8VVT|1|WA|G|1631
*
8VVT|1|WA|U|1641
8VVT|1|WA|A|1642
8VVT|1|WA|A|1643
8VVT|1|WA|U|1644
8VVT|1|WA|C|1645
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain A
- L8
- Chain IA
- L37
- Chain M
- L15
- Chain O
- uL22
Coloring options: