IL_8VVT_068

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUU*(A2M)GA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_068 not in the Motif Atlas

Geometric match to IL_8CRE_412

Geometric discrepancy: 0.1251

The information below is about IL_8CRE_412

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

8VVT|1|WA|U|1866
8VVT|1|WA|U|1867
8VVT|1|WA|U|1868
*
8VVT|1|WA|A2M|1876
8VVT|1|WA|G|1877
8VVT|1|WA|A|1878

Current chains

Chain WA

28S rRNA

Nearby chains

Chain AA

eL29

Chain I

L10

Chain XA

5S ribosomal RNA; 5S rRNA