IL_8VVT_078

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8VVT|1|WA|A|2007

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_078 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.1621

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

8VVT|1|WA|G|2006
8VVT|1|WA|A|2007
8VVT|1|WA|G|2008
8VVT|1|WA|U|2009
8VVT|1|WA|G|2010
*
8VVT|1|WA|C|2019
8VVT|1|WA|U|2020
8VVT|1|WA|C|2021

Current chains

Chain WA

28S rRNA

Nearby chains

Chain QA

uL10

Chain RA

uL3