IL_8VVT_084

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_084 not in the Motif Atlas

Geometric match to IL_8CRE_065

Geometric discrepancy: 0.092

The information below is about IL_8CRE_065

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8VVT|1|WA|G|2363
8VVT|1|WA|U|2364
8VVT|1|WA|A|2365
8VVT|1|WA|G|2366
8VVT|1|WA|U|2367
8VVT|1|WA|A2M|2368
8VVT|1|WA|OMG|2369
*
8VVT|1|WA|C|3863
8VVT|1|WA|G|3864
8VVT|1|WA|A|3865
8VVT|1|WA|A|3866
8VVT|1|WA|A|3867
8VVT|1|WA|C|3868

Current chains

Chain WA

28S rRNA

Nearby chains

Chain C

uL4

Chain O

uL22