IL_8VVT_087

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_087 not in the Motif Atlas

Geometric match to IL_8P9A_401

Geometric discrepancy: 0.181

The information below is about IL_8P9A_401

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

62

Unit IDs

8VVT|1|WA|A|2482
8VVT|1|WA|C|2483
8VVT|1|WA|G|2484
*
8VVT|1|WA|C|2504
8VVT|1|WA|U|2505

Current chains

Chain WA

28S rRNA

Nearby chains

Chain W

uL23

Chain YA

5.8S ribosomal RNA; 5.8S rRNA