IL_8VVT_096

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

8VVT|1|WA|G|2716

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_096 not in the Motif Atlas

Homologous match to IL_8GLP_102

Geometric discrepancy: 0.3456

The information below is about IL_8GLP_102

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

83

Unit IDs

8VVT|1|WA|C|2709
8VVT|1|WA|G|2710
*
8VVT|1|WA|C|2715
8VVT|1|WA|G|2716
8VVT|1|WA|G|2717

Current chains

Chain WA

28S rRNA

Nearby chains

Chain Q

eL19

Chain T

eL22

Chain b

Proliferation-associated protein 2G4