IL_8VVT_112
3D structure
- PDB id
- 8VVT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the rotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- C(5MC)AA(A2M)UGCCUC(OMG)*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 8VVT|1|WA|A2M|3790, 8VVT|1|WA|C|3796, 8VVT|1|WA|C|3815
- QA status
- Modified nucleotides: 5MC, A2M, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVT_112 not in the Motif Atlas
- Geometric match to IL_8CRE_095
- Geometric discrepancy: 0.1573
- The information below is about IL_8CRE_095
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42218.2
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-L-R-L
- Number of instances in this motif group
- 5
Unit IDs
8VVT|1|WA|C|3786
8VVT|1|WA|5MC|3787
8VVT|1|WA|A|3788
8VVT|1|WA|A|3789
8VVT|1|WA|A2M|3790
8VVT|1|WA|U|3791
8VVT|1|WA|G|3792
8VVT|1|WA|C|3793
8VVT|1|WA|C|3794
8VVT|1|WA|U|3795
8VVT|1|WA|C|3796
8VVT|1|WA|OMG|3797
*
8VVT|1|WA|C|3813
8VVT|1|WA|G|3814
8VVT|1|WA|C|3815
8VVT|1|WA|G|3816
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain MA
- eL41
- Chain ZA
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: