IL_8VVT_113

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GC(B8K)G*U(M7A)C

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B8K, M7A

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_113 not in the Motif Atlas

Geometric match to IL_8CRE_096

Geometric discrepancy: 0.1137

The information below is about IL_8CRE_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55516.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

7

Unit IDs

8VVT|1|WA|G|3900
8VVT|1|WA|C|3901
8VVT|1|WA|B8K|3902
8VVT|1|WA|G|3903
*
8VVT|1|WA|U|4568
8VVT|1|WA|M7A|4569
8VVT|1|WA|C|4570

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL3

Chain N

uL13