IL_8VVT_115

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

8VVT|1|WA|U|3919

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_115 not in the Motif Atlas

Geometric match to IL_8CRE_098

Geometric discrepancy: 0.0692

The information below is about IL_8CRE_098

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8VVT|1|WA|G|3918
8VVT|1|WA|U|3919
8VVT|1|WA|U|3920
*
8VVT|1|WA|A|4393
8VVT|1|WA|C|4394

Current chains

Chain WA

28S rRNA

Nearby chains

Chain AA

eL29

Chain C

uL4

Chain Z

uL15