IL_8VVT_117

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

8VVT|1|WA|G|4188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_117 not in the Motif Atlas

Geometric match to IL_5J7L_325

Geometric discrepancy: 0.1165

The information below is about IL_5J7L_325

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8VVT|1|WA|U|3932
8VVT|1|WA|A|3933
8VVT|1|WA|G|3934
*
8VVT|1|WA|U|4186
8VVT|1|WA|G|4187
8VVT|1|WA|G|4188
8VVT|1|WA|G|4189

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

L8

Chain M

L15

Chain NA

eL42