IL_8VVT_118
3D structure
- PDB id
- 8VVT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the rotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- G(5MU)GAGGC*GCUC
- Length
- 11 nucleotides
- Bulged bases
- 8VVT|1|WA|G|4089, 8VVT|1|WA|G|4091, 8VVT|1|WA|G|4092, 8VVT|1|WA|C|4167, 8VVT|1|WA|U|4168
- QA status
- Modified nucleotides: 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVT_118 not in the Motif Atlas
- Geometric match to IL_8CRE_106
- Geometric discrepancy: 0.1341
- The information below is about IL_8CRE_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_00555.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
8VVT|1|WA|G|4087
8VVT|1|WA|5MU|4088
8VVT|1|WA|G|4089
8VVT|1|WA|A|4090
8VVT|1|WA|G|4091
8VVT|1|WA|G|4092
8VVT|1|WA|C|4093
*
8VVT|1|WA|G|4166
8VVT|1|WA|C|4167
8VVT|1|WA|U|4168
8VVT|1|WA|C|4169
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain A
- L8
- Chain G
- eL8
- Chain W
- uL23
- Chain YA
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: