IL_8VVT_127

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCA(1MA)G*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_127 not in the Motif Atlas

Geometric match to IL_8P9A_333

Geometric discrepancy: 0.1302

The information below is about IL_8P9A_333

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8VVT|1|WA|C|4417
8VVT|1|WA|C|4418
8VVT|1|WA|A|4419
8VVT|1|WA|1MA|4420
8VVT|1|WA|G|4421
*
8VVT|1|WA|C|4431
8VVT|1|WA|G|4432
8VVT|1|WA|A|4433
8VVT|1|WA|C|4434
8VVT|1|WA|G|4435

Current chains

Chain WA

28S rRNA

Nearby chains

Chain I

L10

Chain LA

eL40