IL_8VVT_133

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

8VVT|1|WA|A|4493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_133 not in the Motif Atlas

Homologous match to IL_8GLP_150

Geometric discrepancy: 0.1187

The information below is about IL_8GLP_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09353.2

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

8VVT|1|WA|U|4473
8VVT|1|WA|U|4474
8VVT|1|WA|G|4475
*
8VVT|1|WA|C|4490
8VVT|1|WA|C|4491
8VVT|1|WA|A|4492
8VVT|1|WA|A|4493
8VVT|1|WA|G|4494

Current chains

Chain WA

28S rRNA

Nearby chains

Chain H

uL6

Chain LA

eL40