IL_8VVT_134

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAU*ACC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_134 not in the Motif Atlas

Geometric match to IL_8CRE_121

Geometric discrepancy: 0.0821

The information below is about IL_8CRE_121

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8VVT|1|WA|G|4500
8VVT|1|WA|A|4501
8VVT|1|WA|U|4502
*
8VVT|1|WA|A|4508
8VVT|1|WA|C|4509
8VVT|1|WA|C|4510

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL3

Chain U

L23