IL_8VVT_139
3D structure
- PDB id
- 8VVT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the rotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- C(UR3)CAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: UR3
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVT_139 not in the Motif Atlas
- Geometric match to IL_8CRE_125
- Geometric discrepancy: 0.1016
- The information below is about IL_8CRE_125
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8VVT|1|WA|C|4601
8VVT|1|WA|UR3|4602
8VVT|1|WA|C|4603
8VVT|1|WA|A|4604
8VVT|1|WA|G|4605
8VVT|1|WA|U|4606
8VVT|1|WA|A|4607
8VVT|1|WA|C|4608
*
8VVT|1|WA|G|4613
8VVT|1|WA|G|4614
8VVT|1|WA|A|4615
8VVT|1|WA|A|4616
8VVT|1|WA|C|4617
8VVT|1|WA|C|4618
8VVT|1|WA|G|4619
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain B
- uL3
- Chain H
- uL6
- Chain LA
- eL40
- Chain U
- L23
- Chain v
- eukaryotic elongation factor 2
Coloring options: