IL_8VVT_143

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

8VVT|1|WA|A|4661, 8VVT|1|WA|U|4662

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_143 not in the Motif Atlas

Geometric match to IL_5J7L_349

Geometric discrepancy: 0.1125

The information below is about IL_5J7L_349

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

8VVT|1|WA|U|4646
8VVT|1|WA|U|4647
*
8VVT|1|WA|A|4660
8VVT|1|WA|A|4661
8VVT|1|WA|U|4662
8VVT|1|WA|G|4663

Current chains

Chain WA

28S rRNA

Nearby chains

Chain CA

eL31

Chain Q

eL19