IL_8VVT_145

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGAGC*GAACCUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVT|1|WA|C|4744
8VVT|1|WA|G|4745
8VVT|1|WA|G|4748
8VVT|1|WA|A|4749
8VVT|1|WA|G|4750
8VVT|1|WA|C|4751
*
8VVT|1|WA|G|4959
8VVT|1|WA|A|4960
8VVT|1|WA|A|4961
8VVT|1|WA|C|4962
8VVT|1|WA|C|4963
8VVT|1|WA|U|4964
8VVT|1|WA|G|4965

Current chains

Chain WA

28S rRNA

Nearby chains

Chain EA

eL33

Chain YA

5.8S ribosomal RNA; 5.8S rRNA