IL_8VVT_146
3D structure
- PDB id
- 8VVT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the rotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCUCGGAUAG*U(OMG)C(2MG)GAGAG
- Length
- 19 nucleotides
- Bulged bases
- 8VVT|1|WA|C|4762, 8VVT|1|WA|U|4763, 8VVT|1|WA|A|4769, 8VVT|1|WA|OMG|4875, 8VVT|1|WA|C|4876, 8VVT|1|WA|G|4878, 8VVT|1|WA|A|4881
- QA status
- Modified nucleotides: OMG, 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVT_146 not in the Motif Atlas
- Homologous match to IL_9H3G_136
- Geometric discrepancy: 0.4788
- The information below is about IL_9H3G_136
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28855.2
- Basepair signature
- cWW-L-R-L-cWW-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
8VVT|1|WA|C|4761
8VVT|1|WA|C|4762
8VVT|1|WA|U|4763
8VVT|1|WA|C|4764
8VVT|1|WA|G|4765
8VVT|1|WA|G|4766
8VVT|1|WA|A|4767
8VVT|1|WA|U|4768
8VVT|1|WA|A|4769
8VVT|1|WA|G|4770
*
8VVT|1|WA|U|4874
8VVT|1|WA|OMG|4875
8VVT|1|WA|C|4876
8VVT|1|WA|2MG|4877
8VVT|1|WA|G|4878
8VVT|1|WA|A|4879
8VVT|1|WA|G|4880
8VVT|1|WA|A|4881
8VVT|1|WA|G|4882
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain E
- L6
- Chain H
- uL6
- Chain L
- L14
- Chain N
- uL13
- Chain R
- eL20
Coloring options: