IL_8VVT_146

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUCGGAUAG*U(OMG)C(2MG)GAGAG

Length

19 nucleotides

Bulged bases

8VVT|1|WA|C|4762, 8VVT|1|WA|U|4763, 8VVT|1|WA|A|4769, 8VVT|1|WA|OMG|4875, 8VVT|1|WA|C|4876, 8VVT|1|WA|G|4878, 8VVT|1|WA|A|4881

QA status

Modified nucleotides: OMG, 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVT|1|WA|C|4761
8VVT|1|WA|C|4762
8VVT|1|WA|U|4763
8VVT|1|WA|C|4764
8VVT|1|WA|G|4765
8VVT|1|WA|G|4766
8VVT|1|WA|A|4767
8VVT|1|WA|U|4768
8VVT|1|WA|A|4769
8VVT|1|WA|G|4770
*
8VVT|1|WA|U|4874
8VVT|1|WA|OMG|4875
8VVT|1|WA|C|4876
8VVT|1|WA|2MG|4877
8VVT|1|WA|G|4878
8VVT|1|WA|A|4879
8VVT|1|WA|G|4880
8VVT|1|WA|A|4881
8VVT|1|WA|G|4882

Current chains

Chain WA

28S rRNA

Nearby chains

Chain E

L6

Chain H

uL6

Chain L

L14

Chain N

uL13

Chain R

eL20