IL_8VVT_147

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUCC*GUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_147 not in the Motif Atlas

Geometric match to IL_3PDR_004

Geometric discrepancy: 0.2945

The information below is about IL_3PDR_004

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

8VVT|1|WA|G|4774
8VVT|1|WA|U|4775
8VVT|1|WA|C|4776
8VVT|1|WA|C|4777
*
8VVT|1|WA|G|4868
8VVT|1|WA|U|4869
8VVT|1|WA|C|4870

Current chains

Chain WA

28S rRNA

Nearby chains

Chain H

uL6

Chain N

uL13