IL_8VVT_150

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGCG*CGCCCU

Length

11 nucleotides

Bulged bases

8VVT|1|WA|C|4926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_150 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.384

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

8VVT|1|WA|G|4902
8VVT|1|WA|G|4903
8VVT|1|WA|G|4904
8VVT|1|WA|C|4907
8VVT|1|WA|G|4908
*
8VVT|1|WA|C|4923
8VVT|1|WA|G|4924
8VVT|1|WA|C|4925
8VVT|1|WA|C|4926
8VVT|1|WA|C|4927
8VVT|1|WA|U|4928

Current chains

Chain WA

28S rRNA

Nearby chains

Chain L

L14