IL_8VVT_157

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_157 not in the Motif Atlas

Geometric match to IL_8CRE_141

Geometric discrepancy: 0.2018

The information below is about IL_8CRE_141

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8VVT|1|WA|A|5019
8VVT|1|WA|G|5020
8VVT|1|WA|A|5021
8VVT|1|WA|G|5022
*
8VVT|1|WA|C|5037
8VVT|1|WA|G|5038
8VVT|1|WA|A|5039
8VVT|1|WA|U|5040

Current chains

Chain WA

28S rRNA

Nearby chains

Chain IB

eS8

Chain Q

eL19