IL_8VVT_180

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

8VVT|1|ZA|A|313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_180 not in the Motif Atlas

Geometric match to IL_8P9A_388

Geometric discrepancy: 0.2198

The information below is about IL_8P9A_388

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8VVT|1|ZA|G|312
8VVT|1|ZA|A|313
8VVT|1|ZA|U|314
*
8VVT|1|ZA|A|336
8VVT|1|ZA|C|337

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EB

eS4

Chain GB

S6