IL_8VVT_191

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

8VVT|1|ZA|A|555

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_191 not in the Motif Atlas

Geometric match to IL_2QUX_002

Geometric discrepancy: 0.3342

The information below is about IL_2QUX_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8VVT|1|ZA|A|529
8VVT|1|ZA|U|530
*
8VVT|1|ZA|A|554
8VVT|1|ZA|A|555
8VVT|1|ZA|U|556

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EC

S30

Chain JB

S9