IL_8VVT_195

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

8VVT|1|ZA|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_195 not in the Motif Atlas

Geometric match to IL_4LFB_014

Geometric discrepancy: 0.1937

The information below is about IL_4LFB_014

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8VVT|1|ZA|G|606
8VVT|1|ZA|U|607
8VVT|1|ZA|C|608
*
8VVT|1|ZA|G|635
8VVT|1|ZA|C|636

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain DB

uS3

Chain EC

S30

Chain w

Serpine mRNA binding protein 1