IL_8VVT_198

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

8VVT|1|ZA|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_198 not in the Motif Atlas

Geometric match to IL_8CRE_424

Geometric discrepancy: 0.214

The information below is about IL_8CRE_424

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8VVT|1|ZA|G|665
8VVT|1|ZA|U|666
8VVT|1|ZA|U|667
8VVT|1|ZA|A|668
8VVT|1|ZA|A|669
8VVT|1|ZA|A|670
8VVT|1|ZA|A|671
*
8VVT|1|ZA|U|1161
8VVT|1|ZA|C|1162

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain AC

eS26

Chain XB

uS12