IL_8VVT_209

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

8VVT|1|ZA|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_209 not in the Motif Atlas

Geometric match to IL_7KVT_002

Geometric discrepancy: 0.2958

The information below is about IL_7KVT_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8VVT|1|ZA|G|925
8VVT|1|ZA|A|926
*
8VVT|1|ZA|U|1015
8VVT|1|ZA|U|1016
8VVT|1|ZA|U|1017

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain BC

S27

Chain NB

uS15

Chain WB

S15A