IL_8VVT_210

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGCC*GAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_210 not in the Motif Atlas

Geometric match to IL_5LQT_002

Geometric discrepancy: 0.217

The information below is about IL_5LQT_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8VVT|1|ZA|G|928
8VVT|1|ZA|G|929
8VVT|1|ZA|C|930
8VVT|1|ZA|C|931
*
8VVT|1|ZA|G|1010
8VVT|1|ZA|A|1011
8VVT|1|ZA|A|1012
8VVT|1|ZA|U|1013

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain BB

S3A

Chain BC

S27

Chain NB

uS15