IL_8VVT_231

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

(4AC)G*CAG

Length

5 nucleotides

Bulged bases

8VVT|1|ZA|A|1489

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_231 not in the Motif Atlas

Geometric match to IL_8CRE_455

Geometric discrepancy: 0.1248

The information below is about IL_8CRE_455

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8VVT|1|ZA|4AC|1337
8VVT|1|ZA|G|1338
*
8VVT|1|ZA|C|1488
8VVT|1|ZA|A|1489
8VVT|1|ZA|G|1490

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain CB

eS1

Chain DB

uS3

Chain DC

uS14

Chain QB

S16

Chain UB

uS10

Chain w

Serpine mRNA binding protein 1