IL_8VVT_236

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_236 not in the Motif Atlas

Geometric match to IL_3SZX_002

Geometric discrepancy: 0.1069

The information below is about IL_3SZX_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8VVT|1|ZA|A|1537
8VVT|1|ZA|C|1538
8VVT|1|ZA|U|1539
*
8VVT|1|ZA|A|1594
8VVT|1|ZA|U|1595
8VVT|1|ZA|U|1596

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain FB

S5

Chain QB

S16

Chain SB

uS13

Chain TB

eS19

Chain ZB

eS25