IL_8VVT_248
3D structure
- PDB id
- 8VVT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the rotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGAG*CGAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVT_248 not in the Motif Atlas
- Geometric match to IL_8CRE_474
- Geometric discrepancy: 0.1079
- The information below is about IL_8CRE_474
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.2
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 43
Unit IDs
8VVT|1|ZA|U|1733
8VVT|1|ZA|G|1734
8VVT|1|ZA|A|1735
8VVT|1|ZA|G|1736
*
8VVT|1|ZA|C|1798
8VVT|1|ZA|G|1799
8VVT|1|ZA|A|1800
8VVT|1|ZA|A|1801
Current chains
- Chain ZA
- 18S rRNA
Nearby chains
- Chain GB
- S6
- Chain IB
- eS8
- Chain U
- L23
- Chain V
- L24
- Chain WA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: